Changes in version 1.4.0.9000 - Add Zenodo DOI badge - To do: Increase maximum allowed variants in LDmatrix to 3000. Changes in version 1.4.0 (2024-04-10) - Added Zenodo DOI badge in version 1.3.0.9000 - 3/1/2024 - Increased maximum allowed variants in LDmatrix to 2500 - 3/1/2024 - Added bp window size parameter to LDproxy - 3/4/2024 - Add bp window size parameter to LDproxy_batch Changes in version 1.3.0 (2023-05-31) - Change LDlink Domain URL to https://ldlink.nih.gov/ (previous url root will no longer work following an unspecified amount of time). - Add Continuous Integration using Github Actions. - Update citation file with bibentry style Changes in version 1.2.3 (2022-12-15) - Add feature to provide root URL to API - Fix bug that scrambled columns in LDproxy_batch when 'append' option is TRUE - Update Roxygen version to 7.2.2 Changes in version 1.2.2 (2022-08-08) - Issue #19, fix bug in LDtrait error handling of response data. - Update CRAN downloads badge in README - Remove link for 1000 Genomes Project in README and vignette Changes in version 1.2.1 (2022-06-07) - Update version number - Fix bug in LDexpress that returned GRCH37 results when genome build was GRCh38 or GRCh38 High Coverage. - Fix bug in LDproxy handling of error/warning messages in response data. - Update RoxygenNote to 7.2.0 Changes in version 1.2.0 (2022-05-11) - Submission date: 2022-05-11 - Issue #13 - Add new argument to LDhap (table_type) with four options for different types data output. - Issue #14 - Fix LDhap valid input check for number of input 'snps', line 94. - Add 'snps' to the WORDLIST - Update test-ldhap with additional tests - Update vignette with new LDhap usage examples with new argument. - Make LDhap able to write to file for both types of data returned by the new 'table_type' options. - Add feature 'genome_build' to support different genome builds, GRCh37(hg19), GRCh38(hg38), and GRCh38 High Coverage. - Improve/update error and warning message returned in the response data from the LDlink API server. - Fix CRAN note about 'LazyData' by removing line from Description file. - Update README file. - Add testthat tests for feature genome_build - Add three new Illumina chips to SNPchip - Add two new Affymetrix chips to SNPchip - Major update to vignette with new feature genome_build Changes in version 1.1.2 (2021-02-19) - Submission date: 2021-02-19 - Add link to LDlink web site documentation. - Correct code chunk in vignette FAQ #4, changed option to eval=FALSE; this vignette code chunk no longer requires an internet resource - added notes to README and vignette that 'internet access required' to use - Add code to check if required internet resources are available per CRAN Changes in version 1.1.1 (2021-02-02) - Release date: 2021-02-02 - Added three new functions, LDtrait, LDexpress & list_gtex_tissues - Updated vignette with new descriptions of functions and examples. - Major update to README.md, including basic examples - Added a NEWS.md file to track changes to the package. - Issue #2, fixed warning message from write.table in LDproxy_batch when append = TRUE - Updated most function descriptions on package help page - Added spell checking for building package Changes in version 1.0.2 (2020-03-02) - Release date 2020-03-02 - Minor updates Changes in version 1.0.1 (2019-10-17) - Release date 2019-10-17 - Minor updates made for publication. Changes in version 1.0.0 (2019-08-01) - Release date 2019-08-01 - Initial release.