Package: LDlinkR 1.4.0.9000
Timothy A. Myers
LDlinkR: Calculating Linkage Disequilibrium (LD) in Human Population Groups of Interest
Provides access to the 'LDlink' API (<https://ldlink.nih.gov/?tab=apiaccess>) using the R console. This programmatic access facilitates researchers who are interested in performing batch queries in 1000 Genomes Project (2015) <doi:10.1038/nature15393> data using 'LDlink'. 'LDlink' is an interactive and powerful suite of web-based tools for querying germline variants in human population groups of interest. For more details, please see Machiela et al. (2015) <doi:10.1093/bioinformatics/btv402>.
Authors:
LDlinkR_1.4.0.9000.tar.gz
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LDlinkR.pdf |LDlinkR.html✨
LDlinkR/json (API)
NEWS
| # Install 'LDlinkR' in R: |
| install.packages('LDlinkR', repos = c('https://cbiit.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/cbiit/ldlinkr/issues
ld-calculatorldlinkldlink-apildlink-webtoollinkage-disequilibriumpopulation-genetics
Last updated 7 months agofrom:c63b233fb3. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 12 2024 |
| R-4.5-win | OK | Nov 12 2024 |
| R-4.5-linux | OK | Nov 12 2024 |
| R-4.4-win | OK | Nov 12 2024 |
| R-4.4-mac | OK | Nov 12 2024 |
| R-4.3-win | OK | Nov 12 2024 |
| R-4.3-mac | OK | Nov 12 2024 |
Exports:LDexpressLDhapLDmatrixLDpairLDpopLDproxyLDproxy_batchLDtraitlist_chipslist_gtex_tissueslist_popSNPchipSNPclip
