Package: LDlinkR 1.4.0.9000

Timothy A. Myers

LDlinkR: Calculating Linkage Disequilibrium (LD) in Human Population Groups of Interest

Provides access to the 'LDlink' API (<https://ldlink.nih.gov/?tab=apiaccess>) using the R console. This programmatic access facilitates researchers who are interested in performing batch queries in 1000 Genomes Project (2015) <doi:10.1038/nature15393> data using 'LDlink'. 'LDlink' is an interactive and powerful suite of web-based tools for querying germline variants in human population groups of interest. For more details, please see Machiela et al. (2015) <doi:10.1093/bioinformatics/btv402>.

Authors:Timothy A. Myers [aut, cre], Stephen J. Chanock [aut], Mitchell J. Machiela [aut]

LDlinkR_1.4.0.9000.tar.gz
LDlinkR_1.4.0.9000.zip(r-4.5)LDlinkR_1.4.0.9000.zip(r-4.4)LDlinkR_1.4.0.9000.zip(r-4.3)
LDlinkR_1.4.0.9000.tgz(r-4.4-any)LDlinkR_1.4.0.9000.tgz(r-4.3-any)
LDlinkR_1.4.0.9000.tar.gz(r-4.5-noble)LDlinkR_1.4.0.9000.tar.gz(r-4.4-noble)
LDlinkR_1.4.0.9000.tgz(r-4.4-emscripten)LDlinkR_1.4.0.9000.tgz(r-4.3-emscripten)
LDlinkR.pdf |LDlinkR.html
LDlinkR/json (API)
NEWS

# Install 'LDlinkR' in R:
install.packages('LDlinkR', repos = c('https://cbiit.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/cbiit/ldlinkr/issues

On CRAN:

ld-calculatorldlinkldlink-apildlink-webtoollinkage-disequilibriumpopulation-genetics

9.27 score 54 stars 1 packages 175 scripts 1.1k downloads 10 mentions 13 exports 8 dependencies

Last updated 7 months agofrom:c63b233fb3. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 13 2024
R-4.5-winOKOct 13 2024
R-4.5-linuxOKOct 13 2024
R-4.4-winOKOct 13 2024
R-4.4-macOKOct 13 2024
R-4.3-winOKOct 13 2024
R-4.3-macOKOct 13 2024

Exports:LDexpressLDhapLDmatrixLDpairLDpopLDproxyLDproxy_batchLDtraitlist_chipslist_gtex_tissueslist_popSNPchipSNPclip

Dependencies:askpasscurlhttrjsonlitemimeopensslR6sys

LDlinkR: An R Package for Rapidly Calculating Linkage Disequilibrium Statistics in Diverse Populations

Rendered fromLDlinkR.Rmdusingknitr::rmarkdownon Oct 13 2024.

Last update: 2024-03-04
Started: 2021-01-11