Package: LDlinkR 1.4.0.9000

Timothy A. Myers

LDlinkR: Calculating Linkage Disequilibrium (LD) in Human Population Groups of Interest

Provides access to the 'LDlink' API (<https://ldlink.nih.gov/?tab=apiaccess>) using the R console. This programmatic access facilitates researchers who are interested in performing batch queries in 1000 Genomes Project (2015) <doi:10.1038/nature15393> data using 'LDlink'. 'LDlink' is an interactive and powerful suite of web-based tools for querying germline variants in human population groups of interest. For more details, please see Machiela et al. (2015) <doi:10.1093/bioinformatics/btv402>.

Authors:Timothy A. Myers [aut, cre], Stephen J. Chanock [aut], Mitchell J. Machiela [aut]

LDlinkR_1.4.0.9000.tar.gz
LDlinkR_1.4.0.9000.zip(r-4.7)LDlinkR_1.4.0.9000.zip(r-4.6)LDlinkR_1.4.0.9000.zip(r-4.5)
LDlinkR_1.4.0.9000.tgz(r-4.6-any)LDlinkR_1.4.0.9000.tgz(r-4.5-any)
LDlinkR_1.4.0.9000.tar.gz(r-4.7-any)LDlinkR_1.4.0.9000.tar.gz(r-4.6-any)
LDlinkR_1.4.0.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
LDlinkR/json (API)
NEWS

# Install 'LDlinkR' in R:
install.packages('LDlinkR', repos = c('https://cbiit.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/cbiit/ldlinkr/issues

On CRAN:

Conda:

ld-calculatorldlinkldlink-apildlink-webtoollinkage-disequilibriumpopulation-genetics

9.05 score 65 stars 2 packages 286 scripts 982 downloads 10 mentions 13 exports 8 dependencies

Last updated from:c63b233fb3. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK125
source / vignettesOK191
linux-release-x86_64OK126
macos-release-arm64OK162
macos-oldrel-arm64OK132
windows-develOK79
windows-releaseOK79
windows-oldrelOK67
wasm-releaseOK98

Exports:LDexpressLDhapLDmatrixLDpairLDpopLDproxyLDproxy_batchLDtraitlist_chipslist_gtex_tissueslist_popSNPchipSNPclip

Dependencies:askpasscurlhttrjsonlitemimeopensslR6sys

LDlinkR: An R Package for Rapidly Calculating Linkage Disequilibrium Statistics in Diverse Populations

Timothy A. Myers, Stephen J. Chanock and Mitchell J. Machiela

Rendered fromLDlinkR.Rmdusingknitr::rmarkdownon May 09 2026.

Last update: 2024-03-04
Started: 2021-01-11