Package: LDlinkR 1.4.0.9000

Introduction | Understanding Linkage Disequilibrium | LDlink Data Sources | Calculations | Installation | Personal Access Token - Required | Functions and Examples | LDexpress | Function | Arguments | Usage: Single query variant, multiple populations, multiple tissue types using tissue abbreviation | Usage: Multiple query variants, single population, a tissue type using the full LDexpress tissue name, no spaces, and genome build GRCh38. | LDhap | Usage: Multiple query variants, single population, and genome build GRCh38 High Coverage | Usage: Multiple query variants, multiple populations using default genome build GRCh37 (hg19) | Usage: Multiple query variants, single population, 'merged' output format type. | Usage: Multiple query variants, single population, 'both' output format type. | LDmatrix | Usage: Multiple query variants, single population, R^2^ and genome build GRCh38 (hg38). | Usage: Multiple query variants (mixed use of rsID's & genomic coordinates), multiple populations, D' | Usage: Multiple query variants read from text file, multiple populations, D' | LDpair | Usage: With output argument set to "text" and genome build GRCh38 (hg38) | Usage: With no output argument option specified, using default "table". | LDpop | Usage | LDproxy | Usage: single reference population and default genome build GRCh37 (hg19). | LDproxy_batch | Usage: multiple variants, default pop and r2d | LDtrait | Usage: Single query variant, multiple reference populations and genome build GRCh38(hg38) | Usage: Multiple query variants, multiple reference populations and win_size set to 750000 base pairs (bp), default genome build GRCh37(hg19). | SNPchip | Usage: Multiple variants, search "ALL" available chip arrays | Usage: Multiple variants, search two Affymetrix arrays, and genome build GRCh38 (hg38) | Usage: Multiple variants, search all available Affymetrix arrays using, "ALL_Affy" | SNPclip | Usage: Multiple Variants | Utilities and Examples | list_chips | list_pop | list_gtex_tissues | FAQs (Frequently Asked Questions) | Session Information